![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.006G190500.1 | ||||||||
Common Name | B456_006G190500, LOC105800037 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 430aa MW: 48304.6 Da PI: 8.8515 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5e-06 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Gorai.006G190500.1 56 YVCEICNQGFQRDQNLQMHRRRH 78 9*********************9 PP | |||||||
2 | zf-C2H2 | 15.7 | 4.4e-05 | 133 | 155 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ Gorai.006G190500.1 133 WVCQKCSKGYAVQSDYKAHLKTC 155 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.67E-5 | 53 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 55 | 78 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 56 | 78 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS01359 | 0 | 58 | 138 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00355 | 210 | 97 | 127 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 96 | 133 | 153 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 48 | 160 | 182 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 430 aa Download sequence Send to blast |
MLPDNSCSSL PSLEPFTCID NGNNNNKRKR RPAGTPDPDA EVVSLSPKTL LESDRYVCEI 60 CNQGFQRDQN LQMHRRRHKV PWKLLKRETP VVRKRVFVCP EPSCLHHDPC HALGDLVGIK 120 KHFRRKHSNH KQWVCQKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA 180 CHMSRSRPQS QAMQPVCLSQ TASSSNPSND TNFSTVPWPS LELANTTTDT MLLNPTKDNS 240 PKNAHYHDLE LQLLTTSNPT EVSVPPKKHD HHSIQLQLSI GSFQSTCTEK EATKKSTEIH 300 EKPVFVASRL KEEAVAQLRL AMAEKAYAEE ARKQARRQVE LAEHEFAKAK RIRQQAQAES 360 AKAQALKNHA VKQINSTILQ VTCHACKHRF QATTPPEENS LVVSYISSAI TEGEVENDSL 420 TNLTKPTNI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012486369.1 | 0.0 | PREDICTED: protein indeterminate-domain 16-like isoform X1 | ||||
Swissprot | F4IPE3 | 1e-145 | IDD15_ARATH; Protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A0D2T0P3 | 0.0 | A0A0D2T0P3_G | ||||
STRING | POPTR_0015s05180.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM693 | 28 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-132 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.006G190500.1 |
Entrez Gene | 105800037 |
Publications ? help Back to Top | |||
---|---|---|---|
|