PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G190500.1
Common NameB456_006G190500, LOC105800037
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 430aa    MW: 48304.6 Da    PI: 8.8515
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G190500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-065678123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C++ F r  nL+ H r+H
  Gorai.006G190500.1 56 YVCEICNQGFQRDQNLQMHRRRH 78
                        9*********************9 PP
2zf-C2H215.74.4e-05133155123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k +  +s++k H++t+
  Gorai.006G190500.1 133 WVCQKCSKGYAVQSDYKAHLKTC 155
                         58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.67E-55379No hitNo description
Gene3DG3DSA:3.30.160.601.7E-55578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.975678IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
PROSITE patternPS01359058138IPR019786Zinc finger, PHD-type, conserved site
SMARTSM0035521097127IPR015880Zinc finger, C2H2-like
SMARTSM0035596133153IPR015880Zinc finger, C2H2-like
SMARTSM0035548160182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MLPDNSCSSL PSLEPFTCID NGNNNNKRKR RPAGTPDPDA EVVSLSPKTL LESDRYVCEI  60
CNQGFQRDQN LQMHRRRHKV PWKLLKRETP VVRKRVFVCP EPSCLHHDPC HALGDLVGIK  120
KHFRRKHSNH KQWVCQKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA  180
CHMSRSRPQS QAMQPVCLSQ TASSSNPSND TNFSTVPWPS LELANTTTDT MLLNPTKDNS  240
PKNAHYHDLE LQLLTTSNPT EVSVPPKKHD HHSIQLQLSI GSFQSTCTEK EATKKSTEIH  300
EKPVFVASRL KEEAVAQLRL AMAEKAYAEE ARKQARRQVE LAEHEFAKAK RIRQQAQAES  360
AKAQALKNHA VKQINSTILQ VTCHACKHRF QATTPPEENS LVVSYISSAI TEGEVENDSL  420
TNLTKPTNI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486369.10.0PREDICTED: protein indeterminate-domain 16-like isoform X1
SwissprotF4IPE31e-145IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLA0A0D2T0P30.0A0A0D2T0P3_G
STRINGPOPTR_0015s05180.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-132C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]